Proceedings-Artikel

SIA: Scalable Interoperable Annotation Server

Johannes Kirschnick; Philippe Thomas
In: Proceedings of the BioCreative V.5 Challenge Evaluation Workshop. BioCreative Workshop, Barcelona, Spain, Pages 138-145, ISBN 978-84-933255-9-6, 4/2017.

Abstract

Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text mining- and information extraction-tools. However, the integration of freely available tools into customized workflows is often cumbersome and difficult. We describe SIA our contribution to the BeCalm-TIPS task, a scalable, extensible, and robust annotation service. The system currently covers three named entity types (i.e., Mutations, Diseases, and miRNA) and is freely available under Apache 2.0 license at https://github.com/Erechtheus/sia.

Projekte

MACSS
SD4M
SDW
Smart Data Forum

Weitere Links

BibTeX

scalable-interchangeable-annotation.pdf

http://www.biocreative.org/media/store/files/2017/BioCreative_V5_paper19.pdf