Identifying Protein-Protein interactions in Biomedical publications.

Alejandro Figueroa, Günter Neumann

In: Workshop Proceedings of the BioCreAtIvE Challenge - Critical Assessment of Information Extraction in Molecular Biology. BioCreative Workshop 2007.


The paper describes the approaches and the results of our participation in the protein-protein interaction (PPI) extraction task (sub-tasks 1 to 3) of the BioCreative II challenge.1 The core of our approach is to analyse the logical forms of those sentences which contain the mentioning of relevant protein names, and to rank the sentences from which the relations where extracted using the class descriptors computed in the sub-task 1 and interaction sentences from the Christine Brun corpus.

Deutsches Forschungszentrum für Künstliche Intelligenz
German Research Center for Artificial Intelligence