RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language modelsMuhammad Nabeel Asim; Muhammad Ali Ibrahim; Tayyaba Asif; Andreas DengelIn: Heliyon, Vol. 11, Pages 1-72, Elsevier, 1/2025.
CAPTURE: Comprehensive anti-cancer peptide predictor with a unique amino acid sequence encoderHina Ghafoor; Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Sheraz Ahmed; Andreas DengelIn: Computers in Biology and Medicine - An International Journal, Vol. 176, Page 108538, Elsevier, 6/2024.
DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding methodMuhammad Ali Ibrahim Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Ahtisham Fazeel; Andreas Dengel; Sheraz AhmedIn: Briefings in Bioinformatics, Vol. 24, No. 1, Pages 546-566, Oxford University Press, 12/2022.
